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| Cryptonomicon Annotations |
| Subject | Page number |
 |
| Friedman, William | 000a |
| Purple | 000a |
| Cryptography | 000b |
| Marcos, Imelda and Ferdinand | 000b |
| Turing, Alan | 000b |
| Haiku | 001 |
| Shaftoe, Bobby | 001 |
| Bach, Johann Sebastian | 006 |
| Pipe Organs | 006 |
| Waterhouse, Lawrence Pritchard | 006 |
| Atanasoff, John Vincent | 008 |
| Atanasoff-Berry Computer | 008 |
| Berry, Clifford | 008 |
| Institute for Advanced Study | 009 |
| Princeton | 009 |
| Princeton University | 009 |
| Riemann Zeta Function | 009 |
| Cambridge University | 010 |
| Kafka, Franz | 011 |
| Von Hacklheber, Rudy | 011 |
| Liebniz, Gottfried | 012 |
| Principia Mathematica | 012 |
| Whitehead, Alfred North | 012 |
| Russell, Bertrand | 012 |
| Anschluss | 013 |
| Euler, Leonhard | 013 |
| G�del, Kurt | 013 |
| Riemann, Bernhard | 013 |
| Einstein, Albert | 014 |
| Euclid | 014 |
| Quaternions | 015 |
| Wanking | 015 |
| Entscheidungsproblem | 016 |
| Hilbert, David | 016 |
| Hilbert's 23 problems | 016 |
| Universal Turing Machine | 017 | | Hindenburg Zeppelin Disaster | 018 |
| Cantor diagonal argument | 020 |
| Navier-Stokes equations | 022 |
| Pearl Harbor | 022 |
| USS Nevada | 022 |
| Digital fingerprint | 023 |
| Halaby, Avi | 023 |
| Manila | 023 |
| Waterhouse, Randy | 023 |
| Intramuros holocaust 1945 | 024 |
| Philippines | 024 |
| Novus Ordo Seclorum | 025 |
| Ordo | 025 |
| Epiphyte | 027 |
| OCW | 028 |
| Sousa, John Philip | 031 |
| Goto Dengo | 032 |
| Corregidor | 041 |
| Luzon | 041 |
| Magellan, Ferdinand | 043 |
| Key length 4096 | 053 |
| UNIX | 059 |
| Pearl Harbor bombing | 062 |
| USS Arizona | 063 |
| Art of Fugue | 066 |
| Schoen, Commander | 068 |
| Cryptonomicon a fictional cryptology book, Wilkins author | 070 |
| Wilkins, John | 070 |
| Station Hypo | 071 |
| Indigo | 072 |
| Battle of Midway | 073 |
| Magic security clearance | 073 |
| Nimitz, Admiral Chester | 073 |
| Ultra security clearance | 073 |
| Ultra Mega security clearance | 075 |
| MacArthur,General Douglas | 085 |
| Roosevelt, Franklin Delano | 088 |
| Calle Victoria, Manila | 090 |
| Marine Raiders | 094 |
| Root, Enoch | 095 |
| Societas Eruditorum | 095 |
| Zero | 096 |
| Shaftoe, Amy (America) | 099 |
Laying Submarine Cables (see Mother Earth, Mother Board) | 105 |
| SAS | 115 |
| Massive British coinage | 116 |
| Broadway Buildings | 119 |
| Churchill, Winston | 121 |
| Bletchley Park | 123 |
| RAF Special Detachment No. 2702 | 125 |
| Shaftoe, Douglas MacArthur | 126 |
| Godel�s proof | 131 |
| Zeus | 162 |
| Typex | 162 |
| Shark/Triton | 163 |
| USS Enterprise | 163 |
| USS Hornet | 163 |
| Yamamoto, Admiral Isoroku | 163 |
| BeOS | 184 |
| Finux | 184 |
| Windows 95 & NT | 184 |
| Nanotechnology | 187 |
| Von Neumann, John | 195 |
| Chiang Tze Mutual Benevolent Society | 203 |
| One-time pads | 236 |
| Gauss, Johann Karl Friedrich | 239 |
| Turing Magazine | 242 |
| Secret Admirers | 243 |
| Eutropian bracelets | 250 |
| Adachi, General | 253 |
| P-38 | 254 |
| Yamashita, General | 261 |
| Romanji, Hiragana, Katakana, Kanji | 262 |
| Luftwaffe | 272 |
| U-553 | 287 |
| Non-Euclidean Geometry | 290 |
| Digital Signatures | 312 |
| DSA Digital Signature Algorithm | 312 |
| Euler totient function | 314 |
| Microsoft | 313 |
| Go | 318 |
| Mitsubishi G4M bomber 'Betty' | 335 |
| Bougainville | 336 |
| Solomon Islands | 336 |
| Sceptred Isle | 338 |
| U-413 | 342 |
| Baudot Code | 343 |
| Colossus | 343 |
| Bischoff, Kapitanleutnant Gunter | 377 |
| U-691 | 379 |
| D�nitz, Admiral Karl | 390 |
| Kriegsmarine | 411 |
| The General (refers to MacArthur) | 445 |
| Cap�n Crunch | 475 |
| Bach�s Toccata and Fugue in D minor | 575 |
| USS Iowa | 576 |
| Electronic money (Cryptographically secured) | 608 |
| Nipponese Archery | 687 |
| NSA | 705 |
| The Black Chamber | 725 |
| Caisson disease aka The Bends | 736 |
| Pentagon of stars on MacArthur�s collar | 769 |
| Metis | 790 |
| X window | 790 |
| Perl | 792 |
| Athena | 799 |
| Odyssey | 803 |
| Cribs | 808 |
| Known ciphertext attack | 808 |
| Brandenburg concertos | 820 |
| U-234 | 843 |
| Yamato | 843 |
| Royal Society | 844 |
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